YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218188853
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPLHAAPHH AAAAAAVVSS PSSAPLLLRA KPYHPKAAAC SFTVTATTPS RKAFLSCPDH  60
   61 GQAAAGAAPP RSAPASSPAL ISSVQDLYDF ICSGPLVDRI GYTKEKIAGS IDRWLRCGVQ 120
  121 VARLFRLNEL HLSEAEKARI YHFYIPVFLW CEDQVTEHRA KYKDGDEIPP LVIGVSAPQG 180
  181 SGKTTLVFAL DYLFRVAGRN AATLSIDDFY LTAAEQGKLR ERNPGNALLE LRGNAGSHDL 240
  241 PFSVETLESL LKLTKEGLKM KLPRYDKSAF GGRGDRADPS TWPEVEGPLE VVLFEGWMLG 300
  301 FKPLPNEVVK AVDPQLEVVN KNLEAYYDAW DRFIGSWMVI KIKEPSCVYQ WRLQAEIAMR 360
  361 ADGKPGMSDE EVMDFVSRYL PAYHAYLPTL YKEGPNGSNP DHLLVVDIDE KRNPMWGR

Type	Start	End	Confidence
Signal Peptide	1	30	0.89
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	418	0.99