YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCND1_BOVIN
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.53
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	16	0.52
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	185	0.61
Transmembrane Helix	186	205	0.77
Cytoplasmic	206	258	0.47
Transmembrane Helix	259	279	0.88
Non-Cytoplasmic	280	286	0.76
Transmembrane Helix	287	305	0.53
Cytoplasmic	306	325	0.63
Transmembrane Helix	326	347	0.92
Non-Cytoplasmic	348	355	0.64
Transmembrane Helix	356	379	0.80
Cytoplasmic	380	386	0.56
Transmembrane Helix	387	408	0.91
Non-Cytoplasmic	409	648	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGVATWLP FARAAAVGWL PLAQQPLPPA PGVKASRGDE VLVVNVSGRR FETWKNTLDR  60
   61 YPDTLLGSSE KEFFYNADSG EYFFDRDPDM FRHVLNFYRT GRLHCPRQEC IQAFDEELAF 120
  121 YGLVPELVGD CCLEEYRDRK KENAERLAED EEAEQAGDGP TLPAGSSLRQ RLWRAFENPH 180
  181 TSTAALVFYY VTGFFIAVSV IANVVETIPC RSPTRRPPRE QPCGDRFPLA FFCMDTACVL 240
  241 IFTGEYLLRL FAAPSRCRFL RSVMSLIDVV AILPYYIGLF MPKNEDVSGA FVTLRVFRVF 300
  301 RIFKFSRHSQ GLRILGYTLK SCASELGFLL FSLTMAIIIF ATVMFYAEKG TNKTNFTSIP 360
  361 AAFWYTIVTM TTLGYGDMVP STIAGKIFGS ICSLSGVLVI ALPVPVIVSN FSRIYHQNQR 420
  421 ADKRRAQQKV RLARIRLAKS GTTNAFLQYK QNGSLEDSGG GEEQALCVRN RSAFEQQHHH 480
  481 LLHCLEKTTC HEFTDELTFS EALGAVSLGS RTSRSTSVSS QPVGAGSLLS SCCPRRAKRR 540
  541 AIRLANSTAS VSRGSMQELD TLAGLRRSPA PQSRSSLNAK PHDSLDLTCD SRDFVAAIIS 600
  601 IPTPPANTPD ESQPSSPGGG GGGASSTLRN SSLGTPCLLP ETVKISSL