YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60552824
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.76
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWQFCILCLC VLMAFVTTDP TVTFLEQTPR WRLVPRGQAA NLRCILKNSQ YPFMSWYQQD  60
   61 LQKQLQWLVT LRSPGDKEVK SLPGVDYLAT RVSDTELRLQ VANMSQGRTL YCTCSDRANQ 120
  121 AQYFGEGTRL SVLEDLKTVT PPKVSLFEPS EAEIADKQKA TLVCLARGFF PDHVELSWWV 180
  181 NGKEIRNGVS TDPQAYKESN NITYCLSSRL RVSAPFWHNP RNHFRCQVQF YGLTEEDNWS 240
  241 EDSPKPVTQN ISAEAWGRAD CGITSASYQQ GVLSATILYE ILIGKATLYA VLVSTLVVMA 300
  301 MVKRKSS

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	280	0.98
Transmembrane Helix	281	302	0.68
Cytoplasmic	303	307	0.72