YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62549192
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.92
Transmembrane Helix	64	79	0.82
Non-Cytoplasmic	80	95	0.69
Transmembrane Helix	96	117	0.89
Cytoplasmic	118	140	0.71
Transmembrane Helix	141	156	0.72
Non-Cytoplasmic	157	173	0.62
Transmembrane Helix	174	193	0.93
Cytoplasmic	194	202	0.82
Transmembrane Helix	203	222	0.95
Non-Cytoplasmic	223	249	0.82
Transmembrane Helix	250	270	0.83
Cytoplasmic	271	288	0.96
Transmembrane Helix	289	313	0.88
Non-Cytoplasmic	314	353	0.94
Transmembrane Helix	354	385	0.64
Cytoplasmic	386	405	0.90
Transmembrane Helix	406	424	0.95
Non-Cytoplasmic	425	441	0.83
Transmembrane Helix	442	461	0.89
Cytoplasmic	462	471	0.66
Transmembrane Helix	472	491	0.92
Non-Cytoplasmic	492	500	0.66
Transmembrane Helix	501	529	0.77
Cytoplasmic	530	554	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAEQDGDIL EEDSPQDNGI ETNRYSSISP PASPVVQEEP FTTYFEDKVP IPESTNQVFS  60
   61 FRKLWAFTGP GFLMSIAYLD PGNIESDLQS GAKAGFKLLW VLLLATIIGL LLQRLAARLG 120
  121 VVTGMHLAEV CNRQYPTVPR IILWLMVELA IIGSDMQEVI GCAIALNLLS VGRIPLWGGV 180
  181 LITITDTFVF LFLDKYGLRK LEAFFGFLIT VMAISFGYEY ILVKPDQGKL LTGMFVPYCA 240
  241 GCGPVQLEQA VGIVGAVIMP HNIYLHSALV KSREIDRKNK KDVKEANKYF FIESTVALFI 300
  301 SFLINVFVVA VFAEAFYDKT NIQVHEECNA TGSPHTDLFP MNNNTLEVDI YKGGVVLGCV 360
  361 FGPAALYIWA IGILAAGQSS TMTGTYSGQF VMEGFLNLRW SRFARVLLTR SIAITPTLLV 420
  421 AIFQDVQHLT GMNDFLNVLQ SMQLPFALIP ILTFTSLTSI MNDFANGLVW KISGGIVILV 480
  481 VCAINMYFVV VYVTALNSVL LYVLASLLSV AYLCFVGYLA WHCLVALGVS RVDFSSRVRK 540
  541 RPALLIEEQS EYDS