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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|56791762, gi|...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDELDQSPLI SSSSSAASTP SPGTERPAPP QPEPRRRVSS SGSADETLFA LPATSEPLMH  60
   61 SSAEKVVDLQ EQPGSAKSLG QEDFTAVPLD TAASLLSFSP LSADPFKEHA AFDSVSDALP 120
  121 ARGIYKESAS EVCKEAMENV RNPFLAEGNK RDISEMKYSE MEPSFTKAEA ATIFQAEEMQ 180
  181 LEGPKELCDL EKMPAQPLIM SPETPEDLFE KNEEDIFSSK DKGRDGDSGD KKALKEDAIR 240
  241 REEYVDFKQY EPVWEVEGAG HGLSGLREDI ESNIDGKLET SLDEKYGEDK LSVLKDYERD 300
  301 SEGSAEDLSF PNSPEAVKEP SQNYITCTKF ESSVTPDGSK VKSICPIEED TSENRTDDEK 360
  361 KIAEMKAQNT EQGDFSSQAI GKQEGLEADD AKTGSISTLL SDTAASMPEG LTPDLVQEAY 420
  421 ESEMHDAACT KLAYETKIDL VQTSESVQET LKPVTQLCPS FEDSEAAPSP VLPDIVMEAP 480
  481 LSSGTAGAEA STVQLETSQL GTFVTTASYE NVKKEAEKPP LYQEAVNMPL TQAQEAKEEL 540
  541 TLKKADRESS TSPEDLETPY ISIACDLIKE TKVSGESASP SLTDYSTTPI TEHLSQDVSE 600
  601 HKELAEKLSP QFGKCDLFSR QVMPDFPGKE SEDQTLILNG KSVENIETDE EQERLVDSLA 660
  661 ATGKPYLESF QDELDSSKIV TTQPSEPTPA KIAKAEKIPL QMEELNALAY STDVSVAMEP 720
  721 KPGDSKGLSP SSPVSVEDDF VMLVDPKTGT EFVAEVTDRE TVHKNESKDI SNEIRDEKRQ 780
  781 APLTELPCDL SVRNVEVKTE DDAHALKKSL QAIDREVPEV SMVSLPATGT SPSSTEKEIV 840
  841 SVGKPEAFEK EAERGAASAK EKEKPTAVFS AKLNVSSVVD LLYWRDIKKT GVVFGASLFL 900
  901 LLSLTVFSIV SVTAYIALAL LSVTISFRIY KGVIQAIQKS DEGHPFRAYL ESDVAVSEEL 960
  961 IQKYSSVVLG HINGTVKELR RLFLVDDLVD SLKFAVLMWV FTYVGALFNG LTLLILALIS1020
 1021 LFSVPVIYER HQAQIDHYLG LVNKNVKDAM AKIQAKIPGL KRKTE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle