YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72397563, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKIMNPLVD LLATNRQEII SHLVFPIILT IFTSIFTSTI SAIQLHYLDL KEKNRYLNLL  60
   61 KINYPSVEAV VDTIKQFKRI SHIYFVHILL FGLFLGELFS LLFIFTFSKL DIISKLFRKY 120
  121 ISLTNISDIG LYCYALFLLV IMPVLIYLTV YLLCCFIKSK CPLTKIDNDF CKLRNSQILS 180
  181 YFSYWLSVGL ILGPYVFGTL FVYIMITNPS FSHDFHWKPN DKFALVFTII LFLLVIFLSL 240
  241 IILGDIFKNI KQFPKNVIDP IINHYQCNFP NLTIKTDSEE FQGKLKDFQN KFLVTLCEGG 300
  301 ILHFISWDKI ETMKASDTNK NECTAYGEPK KKKYISVKFV ASTLILSVLL VGLYTIYHAN 360
  361 SPYNEVNDLM ELGRDEDALK VINKSIDIDP NNDYAWNIKG NVLYHLGRYD EALQAYDKAI 420
  421 AINPNYVDAW NSKGNALYRL GKYDEALQAS NKAIAINPNY ADAWNGKGNA LYGLGRYDEA 480
  481 LQAYDKAIAI NPNYAYAWNG KGNALYRLGR YDEALQAYDK AIAINPNYAD AWNGKGNALY 540
  541 GLSRYDEALQ ASNKATELKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.88
Transmembrane Helix	19	43	0.82
Cytoplasmic	44	82	0.88
Transmembrane Helix	83	107	0.90
Non-Cytoplasmic	108	130	0.90
Transmembrane Helix	131	155	0.87
Cytoplasmic	156	181	0.91
Transmembrane Helix	182	206	0.90
Non-Cytoplasmic	207	222	0.96
Transmembrane Helix	223	244	0.94
Cytoplasmic	245	338	0.95
Transmembrane Helix	339	357	0.94
Non-Cytoplasmic	358	560	0.98