YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73669641, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKHSNSYP NGKGSGSEQL HENTRKKGFF NFLSSFHVHS HDHSHTHSHT PSYKHSHTHG  60
   61 TVDPSILATS KGLWAVKWSF IGLMVTAVLQ IFIVYISGSV ALLADTIHNF GDASTAIPLA 120
  121 IAFSLARRKP SKRFSYGYGR VEDLAGVIIV FLILFSAIVA GYESVNRFFS PQPIEHLQAV 180
  181 VVAGIIGCVG NELVAQFRMK VGKEIGSAAL IADGYHARVD GFTSLAVLIG AAGIWVGYPI 240
  241 IDPLIGLLIT VAILKIVFDT SKLVFIRLLD GVEPEVIDNV KIIAESVEGV CEVTDLRVRW 300
  301 IGHQLHAEIN ASVEPSLSVE EGHEIASVIR EKLLENFFYL SGTTIHVDPL TASGESCHCG 360
  361 HKNLEKIRGK QKNILVAYFQ

Type	Start	End	Confidence
Cytoplasmic	1	75	0.99
Transmembrane Helix	76	98	0.88
Non-Cytoplasmic	99	106	0.73
Transmembrane Helix	107	126	0.91
Cytoplasmic	127	143	0.84
Transmembrane Helix	144	162	0.94
Non-Cytoplasmic	163	175	0.83
Transmembrane Helix	176	195	0.92
Cytoplasmic	196	214	0.88
Transmembrane Helix	215	235	0.87
Non-Cytoplasmic	236	239	0.63
Transmembrane Helix	240	258	0.83
Cytoplasmic	259	380	0.88