YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73669425, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPLLLFFYI IGFTCFSVGI LTIPYYPLSL AFEMRKSKQN IFNSKNPFVS IVVPAYNEGK  60
   61 VIGHCIKSIL ESNYSEYEVI LVDDGSSDNT LEEMQHYETN SHVIVVTKKN GGKASALNVG 120
  121 LKLAKGEVIF FVDADGIFAP DTISKMLSGF ISEDVGAVCG NDAPINLDKL QTQLANLLTH 180
  181 VGTGFVRRAL STIDCLPVVS GNIGAYRSST LEKTGPFLEG FIGEDMELTW RVHKAGYKVV 240
  241 FQPWAIVYAE APSTITGLWK QRVRWARGLL KTAYIHRDML FNPKYGLFAF YLPINLTSMI 300
  301 IIPLLQLISI ILLPILLFRN INPIPLSWIS IMGWLGMFSS IFALLFSIAL DRAWLDLKYF 360
  361 YVIPLWVLYS FMMDVVMLWA IIVELRRKEA KWNKLDRTGI VSR

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.68
Transmembrane Helix	6	28	0.92
Cytoplasmic	29	239	0.70
Transmembrane Helix	240	258	0.39
Non-Cytoplasmic	259	295	0.68
Transmembrane Helix	296	318	0.86
Cytoplasmic	319	327	0.75
Transmembrane Helix	328	350	0.90
Non-Cytoplasmic	351	361	0.78
Transmembrane Helix	362	383	0.93
Cytoplasmic	384	403	0.90