YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60649902, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKRRDILAI VLIVLPWTLL ITVWHQSAIA PLLAIRKDDA TETRHENGPA TDSKEYCSQD  60
   61 KDIVEVVRTE YVYTRPPPWS DVLPTIHVIT PTYSRPVQKA ELTRLANTFL HVPNLHWILV 120
  121 EDSQRRTPLV TRLLRETGLN YTHLNVETPR NYKLRGDTRD PRIPRGTMQR NLALRWLRET 180
  181 FNSNSSQAGI VYFADDDNTY SLELFEEMRS TRKVSVWPVA FVGGLRYESP KVNAAGKVYG 240
  241 WKTVFDPHRP FAIDMAGFAI NLRLILIKPQ AYFKLRGVKG GYQESSLLRE LVTLNDLEPK 300
  301 AANCTKILVW HTRTEKPVLV NEGKKGFTDP NVEI

Type	Start	End	Confidence
Signal Peptide	1	27	0.76
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	334	0.98