YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|59891920, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPWLYALIS SPLCLIGMVF NLLFFFCLMR PVSGVTLRNP LRFLLIVVLV NSTFQYLVIA  60
   61 VTIIMLLFDY IFWLETVTRA LIYQFFCGNF LCNAWISIFY YISIVPQHHA IFIWIKRNIK 120
  121 AILYGGFILN QIVLTFAIST GAVTYFFLGP VPVNFTALEL NSTALAQTLE ADMFLFHVAN 180
  181 FSYLLYCTCP LVTLIVSWGK TFFYLRGHMK KMGQSGESFS QPQQKSQMRV TVTGMVQAAL 240
  241 FLPSSLWTVA AALLYITGLF EEVDPSRFIT MTFCSLSSLG NLLCFGFSQS VFRRGIVSVI 300
  301 KKLKG

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.89
Transmembrane Helix	7	28	0.93
Cytoplasmic	29	42	0.86
Transmembrane Helix	43	68	0.86
Non-Cytoplasmic	69	80	0.84
Transmembrane Helix	81	104	0.88
Cytoplasmic	105	121	0.90
Transmembrane Helix	122	146	0.89
Non-Cytoplasmic	147	181	0.93
Transmembrane Helix	182	204	0.91
Cytoplasmic	205	234	0.94
Transmembrane Helix	235	256	0.90
Non-Cytoplasmic	257	267	0.81
Transmembrane Helix	268	288	0.92
Cytoplasmic	289	305	0.86