YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66472306, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLCVTIKGV SFLLQAGLGI LANALVLLAY AHIRLAEARL QPVDAILCHL ALVDLLLLLT  60
   61 RGVPQTMTVF GMRNLLDDTG CKVVIYTYRI ARALSVCITC MLSVFQAVTV APAAGPLLSG 120
  121 VKARLPQLLA PTFAALWFIN MAVCIAAPFF SVAPRNGTVP PFTLNLGFCH VDFHDNLSYV 180
  181 LNGVAVSVRD FAFVGAMLAS SGFILLLLHR HRRQVRAVRR SQGSTMETRA ARTVLMLVIL 240
  241 YSVFFGIDNV IWIYMLTVAQ VPPVVAHMRV FFSSCYASLS PFLIISSNRK LKARMVCATS 300
  301 EQERQAEDGK NSSGKN

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.68
Transmembrane Helix	12	33	0.90
Cytoplasmic	34	44	0.61
Transmembrane Helix	45	63	0.83
Non-Cytoplasmic	64	92	0.71
Transmembrane Helix	93	115	0.76
Cytoplasmic	116	128	0.73
Transmembrane Helix	129	152	0.87
Non-Cytoplasmic	153	190	0.87
Transmembrane Helix	191	209	0.97
Cytoplasmic	210	229	0.93
Transmembrane Helix	230	253	0.86
Non-Cytoplasmic	254	264	0.83
Transmembrane Helix	265	285	0.94
Cytoplasmic	286	316	0.97