YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62288538
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILQQLAQL LDRPFFPWKK VIVGFSVGQY LIEGFLSLRQ FRVLQQTKPP KVLAEEVSQS  60
   61 VFDKSQAYGR AKAKFGFVSA LYGQIQNLAF IYYDALPKLW AITGLLLTRY MPARFTGEIS 120
  121 HTLAFVFTFN IITTILSLPT SYYSTFVIEE KFGFNKQTIK LWVTDMLKGQ FLGIVLGAPI 180
  181 ISAILKIVKK TGTSFFYYLW LFGMARGITI YPIAILPLFN KLTPLKPGIL KTGVEDLARR 240
  241 LKFPLKELHV IDGSKRSAHS NAYFYGLPWK KHIVIYDTLI EKSEPEEVVA VLGHELGHWS 300
  301 LNHTTKLFGI AQFHMFYIFA LFSAFVNNKS LYQDFGFANE MPIMIGFILF SDALAPMDAV 360
  361 VKLLMNVLSR KFEFEADAFA VNLGYSTELA KSLLKLQIQN LSTMDADWMY ASYHYSHPIL 420
  421 PERLAALGWS GGKVTGGKYE DSEKPVKTAD REL

Type	Start	End	Confidence
Cytoplasmic	1	88	0.63
Transmembrane Helix	89	108	0.40
Non-Cytoplasmic	109	118	0.42
Transmembrane Helix	119	146	0.75
Cytoplasmic	147	165	0.47
Transmembrane Helix	166	188	0.85
Non-Cytoplasmic	189	195	0.48
Transmembrane Helix	196	219	0.85
Cytoplasmic	220	306	0.54
Transmembrane Helix	307	326	0.80
Non-Cytoplasmic	327	342	0.57
Transmembrane Helix	343	361	0.72
Cytoplasmic	362	453	0.65