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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|62288212
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHVKHTQRRV SGPGAFGTFT NDQRASRDNL CPDNQQQQQQ RHSHSHQHLV RQSLVSLSNG  60
   61 QPAASAAPDS VSLLRAGDDQ QQHPQQPHLQ QQQQQQQHLQ QQQQRHRSSS SRLSTSGISK 120
  121 QNSSDSRSGL RILDSSHSPV SCGTQSVSST GGQSALYDAC HEYSRSLSAA AAEGAASLLK 180
  181 SHYSDQQLAQ TEPDPEPDPE RDRDRDRDRD RDRERERRHL TNLNLNLSSE YDYSGSDKQQ 240
  241 LVNETYIFKC IANSPSFLRT NKIKEQSKKL RNLSLKTRTA KKKGQIISKS NAVSDNSLHP 300
  301 GDKYLNLYLV EKKHSLQPQV ASTSSSINTT HPQASSAPAS SSSTCTKAPQ ARQQQLLLNG 360
  361 SLKGKGQSQS QGQSRQTLPG HRASVRSESG SGSSHTIPAT GKSPPVPHSL AAKISSSASG 420
  421 SKNCNLLSAS SNSCHKLNAH AQGSGAGSGS GSGSGSGPPG HSHYAAASPK SSVSSNGHLN 480
  481 KYCLTDLTRR KAEFNRQLSA PTDYTHHSSS NGSQQEGSSE ANEGHEPVGE STITVASAGV 540
  541 SYPHPYSYPY HYAHHASSAT APANLKASLQ LHSFGSHHPC PYPARPTSTS CTNSFNRRHI 600
  601 RRHKGKLGDR LLSGDSEESV RCSYCSVLNV NDNDLRISFE NTCTDSLVTA FDDEALLICD 660
  661 QGTEMVHFDD VSLYGTPKEE PMPNIPIVSE KVSANFLKSQ LQSWFQPTDN RLAMKLFGSR 720
  721 KALVKERIRQ KTSGHWVIHP CSSFRFYWDL CMLLLLVANL IILPVAISFF NDDLSTRWIA 780
  781 FNCLSDTIFL IDIVVNFRTG IMQQDNAEQV ILDPKLIAKH YLRTWFFLDL ISSIPLDYIF 840
  841 LIFNQIMKLQ DFSDSFQILH AGRALRILRL AKLLSLVRLL RLSRLVRYVS QWEEVYILQN 900
  901 LQKKSADRRG RMNRKDKDGL TKSNLILKFL NMASVFMRIF NLICMMLLIG HWSGCLQFLV 960
  961 PMLQGFPSNS WVSINELQES YWLEQYSWAL FKAMSHMLCI GYGRFPPQSL TDMWLTMLSM1020
 1021 ISGATCYALF LGHATNLIQS LDSSRRQYRE KVKQVEEYMA YRKLPRDMRQ RITEYFEHRY1080
 1081 QGKFFDEELI LGELSEKLRE DVINYNCRSL VASVPFFANA DSNFVSDVVT KLKYEVFQPG1140
 1141 DIIIKEGTIG TKMYFIQEGV VDIVMANGEV ATSLSDGSYF GEICLLTNAR RVASVRAETY1200
 1201 CNLFSLSVDH FNCVLDQYPL MRKTMETVAA ERLNKIGKNP NIMHQKDEQL SNPESNTITA1260
 1261 VVNALAAEAD DCKDDDMDLK ENLLHGSESS IAEPVQTIRE GLPRPRSGEF RALFEGNTP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle