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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|62288206
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHVKHTQRRV SGPGAFGTFT NDQRASRDNL CPDNQQQQQQ RHSHSHQHLV RQSLVSLSNG  60
   61 QPAASAAPDS VSLLRAGDDQ QQHPQQPHLQ QQQQQQQHLQ QQQQRHRSSS SRLSTSGISK 120
  121 QNSSDSRSGL RILDSSHSPV SCGTQSVSST GGQSALYDAC HEYSRSLSAA AAEGAASLLK 180
  181 SHYSDQQLAQ TEPDPEPDPE RDRDRDRDRD RDRERERRHL TNLNLNLSSE YDYSGSDKQQ 240
  241 LVNETYIFKC IANSPSFLRT NKIKEQSKKL RNLSLKTRTA KKKGQIISKS NAVSDNSLHP 300
  301 GDKYLNLYLV EKKHSLQPQV ASTSSSINTT HPQASSAPAS SSSTCTKAPQ ARQQQLLLNG 360
  361 SLKGKGQSQS QGQSRQTLPG HRASVRSESG SGSSHTIPAT GKSPPVPHSL AAKISSSASG 420
  421 SKNCNLLSAS SNSCHKLNAH AQGSGAGSGS GSGSGSGPPG HSHYAAASPK SSVSSNGHLN 480
  481 KYCLTDLTRR KAEFNRQLSA PTDYTHHSSS NGSQQEGSSE ANEGHEPVGE STITVASAGV 540
  541 SYPHPYSYPY HYAHHASSAT APANLKASLQ LHSFGSHHPC PYPARPTSTS CTNSFNRRHI 600
  601 RRHKGKLGDR LLSGDSEESV RCSYCSVLNV NDNDLRISFE NTCTDSLVTA FDDEALLICD 660
  661 QGTEMVHFDD VSLYGTPKEE PMPNIPIVSE KVSANFLKSQ LQSWFQPTDN RLAMKLFGSR 720
  721 KALVKERIRQ KTSGHWVIHP CSSFRFYWDL CMLLLLVANL IILPVAISFF NDDLSTRWIA 780
  781 FNCLSDTIFL IDIVVNFRTG IMQQDNAEQV ILDPKLIAKH YLRTWFFLDL ISSIPLDYIF 840
  841 LIFNQDFSDS FQILHAGRAL RILRLAKLLS LVRLLRLSRL VRYVSQWEEV YFLNMASVFM 900
  901 RIFNLICMML LIGHWSGCLQ FLVPMLQGFP SNSWVSINEL QESYWLEQYS WALFKAMSHM 960
  961 LCIGYGRFPP QSLTDMWLTM LSMISGATCY ALFLGHATNL IQSLDSSRRQ YREKVKQVEE1020
 1021 YMAYRKLPRD MRQRITEYFE HRYQGKFFDE ELILGELSEK LREDVINYNC RSLVASVPFF1080
 1081 ANADSNFVSD VVTKLKYEVF QPGDIIIKEG TIGTKMYFIQ EGVVDIVMAN GEVATSLSDG1140
 1141 SYFGEICLLT NARRVASVRA ETYCNLFSLS VDHFNCVLDQ YPLMRKTMET VAAERLNKIG1200
 1201 KNPNIMHQKD EQLSNPESNT ITAVVNALAA EADDCKDDDM DLKENLLHGS ESSIAEPVQT1260
 1261 IREGLPRPRS GEFRALFEGN TP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle