YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LMBD1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.96
Transmembrane Helix	12	33	0.94
Cytoplasmic	34	43	0.94
Transmembrane Helix	44	66	0.90
Non-Cytoplasmic	67	101	0.94
Transmembrane Helix	102	124	0.92
Cytoplasmic	125	143	0.94
Transmembrane Helix	144	165	0.94
Non-Cytoplasmic	166	190	0.95
Transmembrane Helix	191	216	0.82
Cytoplasmic	217	306	0.97
Transmembrane Helix	307	327	0.95
Non-Cytoplasmic	328	367	0.93
Transmembrane Helix	368	391	0.86
Cytoplasmic	392	409	0.84
Transmembrane Helix	410	430	0.95
Non-Cytoplasmic	431	493	0.97
Transmembrane Helix	494	515	0.91
Cytoplasmic	516	541	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPVALLSE SVLGWSIFTV VLLVILAFCW VYIRKYQSRQ ESEVISTITA ICALAIALIT  60
   61 SALLPVDIFL VSFMKHPNGT YKEWAANNET RVQIEDTVLY GYYTLYSIIL FCVFLWIPFV 120
  121 YFYYEEKDED NNNKCLQVKN ALKYTIGFVI VCSALLLIGT FVPLASPPNQ NSTQWQKVQY 180
  181 LFEELGSSHG LAALSFSISS LTLIGMLAVI TYTAYGMSVL PLNLIKGTRS VLYERLENTE 240
  241 DTEEVERQID KLKAKCADGR PLSMRDRRNL QDLEDKLQLL HRRGRHLEIA ERNCCNKVGS 300
  301 ALRPMKILLG VFFILVALLF FVTLFISNLD KALHSAGIST GFIIFGTNLT NPLNELLLAL 360
  361 QPVFPLDYVL ITVITMYFVF TSMAGIRNMG IWFFWIRLYK IRPQRTRPQA LLFLCMILLL 420
  421 IVLHTSYMIY SLAPQYVMYG SQKYLLQTPL PTAVPSQSNR SATITKICDA DAPEDQCTVT 480
  481 RSYLFLHKFW FFSTIYYFGN WAFLGVFLIG LVVSCCKGKK SVIEGEVDAD DSDFSDDEYV 540
  541 H