YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CH25H_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGLQHIWDC ILQYEAQLRS PFFPVLFSIT VYLSFCLPFV LLDALSPKVE LIRRYKIQQK  60
   61 ASVSWTMMWS CLALSLYNHV VYIFPLSVLH WYWRPVSYLA EAPGVLRVVW DLAACLLLFD 120
  121 FQYFVWHLLH HKVPWLYRTF HKVHHKYTST FALATEYSGA WETLSLGFFA AVNPMLLGVH 180
  181 PMTEMLFHML NMWLSVEDHC GYDLPWATHR LMPFGLYGGA PHHDVHHQKF KSNYAPYFTH 240
  241 WDKLFGTLHF E

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.63
Transmembrane Helix	21	45	0.86
Cytoplasmic	46	62	0.62
Transmembrane Helix	63	86	0.79
Non-Cytoplasmic	87	107	0.57
Transmembrane Helix	108	129	0.80
Cytoplasmic	130	150	0.52
Transmembrane Helix	151	165	0.33
Non-Cytoplasmic	166	166	0.09
Transmembrane Helix	167	183	0.68
Cytoplasmic	184	251	0.68