YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62199657
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHMREVKIG ESICVLVLLF SGLVTCSGVF GSPLTDDVAT LDTLSENIPS DYRIPIKFIT  60
   61 KDVGGACWLH LNLYPVESSL KKLAVKFGNQ STNKANITIF ITMLQDFRFT LNSDDLEDRM 120
  121 QAFKCHYRRE KWPTRRFFSY VKSVLTVAGS TYGDIPPCTP PPCQTLAAPP FTPGQSRQQN 180
  181 GMNSAVHGLL ALLIIPSVAI LVLTIQMALG RRGRCGARMR EIEPHDRAEE NRNELHSGAA 240
  241 QEDPASTSAS EQDRAWLDSL GCADTEV

Type	Start	End	Confidence
Signal Peptide	1	31	0.84
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	184	0.99
Transmembrane Helix	185	210	0.88
Cytoplasmic	211	267	0.99