YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62199655, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSNIWICT CVHLLLYITV AAYSIEIGNP ITDDIKKISL LKQNIPKDYK ITVRYIPKEV  60
   61 SGMCWVKLNV FHLEVSLKGL AQKFGNISSN KDNIGTFVQI LQDMRYHIGP GLEDSMLDFE 120
  121 CHYVEEMWLT AKYFEFLEDF FNTANSSRDA EDCEPPPCPT STKTTITTTT TASTTSAQHS 180
  181 TNEKRNGLPD DPEKGAFLSK VLESNLMWLL TIPFAIAVVV LLVWKIKSRR NTPQTDRSPE 240
  241 EGPALFSGEE ANISPLDVGI SEKNRLNIIM DV

Type	Start	End	Confidence
Signal Peptide	1	22	0.96
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	205	0.99
Transmembrane Helix	206	224	0.95
Cytoplasmic	225	272	0.95