YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66768322, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLTIPTWLT LLRIVMIPVL VVVFYLPYKW TNFASAGVFA LAAITDWLDG WVARRYHQYS  60
   61 AFGAFLDPVA DKLMVAVALF LIVQGHPTPW MAFWAAVIVG REIAVSALRE WMAEIGQRAK 120
  121 VRVAMIGKVK TTAQMVALLC LLYSVTPGQM PTHEIWLGNL IFQAGYWTLA IAALLTLWSG 180
  181 FQYLQAAWPS LRADEKAFFG LNFGLKNAGC WCMSVAFAGM KKGAEAPLFN DLQMPVEVCR 240
  241 SIFGAGNETR TRDLNLGKVA LYQLSYSRVE QYSTACHRFA LALSPRWRQG KHTRCGGLGR 300
  301 N

Type	Start	End	Confidence
Cytoplasmic	1	8	0.89
Transmembrane Helix	9	28	0.93
Non-Cytoplasmic	29	32	0.84
Transmembrane Helix	33	53	0.82
Cytoplasmic	54	61	0.78
Transmembrane Helix	62	83	0.80
Non-Cytoplasmic	84	89	0.77
Transmembrane Helix	90	111	0.84
Cytoplasmic	112	128	0.86
Transmembrane Helix	129	147	0.88
Non-Cytoplasmic	148	163	0.75
Transmembrane Helix	164	184	0.89
Cytoplasmic	185	301	0.71