YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LSPA_HAEI8
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKSGLSFL WLSAVAFVVD LLTKYIVVQK FDLYESVNVL PVFNLTYVRN YGAAFSFLAD  60
   61 HSGWQQYFFI LLALAISGML VYFLAKNNAE QKIQNSAYAL IIGGALANMV DRTYNGFVVD 120
  121 FFDFYWDIYH YPVFNIADIA ICIGAGLLAL DAFKSEKKKV QDKQVEKCGQ K

Type	Start	End	Confidence
Cytoplasmic	1	6	0.87
Transmembrane Helix	7	28	0.84
Non-Cytoplasmic	29	63	0.96
Transmembrane Helix	64	85	0.92
Cytoplasmic	86	94	0.88
Transmembrane Helix	95	114	0.88
Non-Cytoplasmic	115	130	0.86
Transmembrane Helix	131	150	0.93
Cytoplasmic	151	171	0.92