YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68057567, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.65
Transmembrane Helix	20	39	0.91
Non-Cytoplasmic	40	53	0.60
Transmembrane Helix	54	76	0.82
Cytoplasmic	77	82	0.49
Transmembrane Helix	83	101	0.50
Non-Cytoplasmic	102	102	0.28
Transmembrane Helix	103	124	0.80
Cytoplasmic	125	135	0.73
Transmembrane Helix	136	158	0.84
Non-Cytoplasmic	159	188	0.77
Transmembrane Helix	189	211	0.87
Cytoplasmic	212	251	0.89
Transmembrane Helix	252	270	0.85
Non-Cytoplasmic	271	277	0.68
Transmembrane Helix	278	300	0.80
Cytoplasmic	301	311	0.58
Transmembrane Helix	312	332	0.56
Non-Cytoplasmic	333	350	0.46
Transmembrane Helix	351	373	0.79
Cytoplasmic	374	411	0.38
Transmembrane Helix	412	446	0.73
Non-Cytoplasmic	447	447	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISRVSRFMT TFVSKYLPDP LIFAVLRTFV TFICAWGLTD STPVDLVNMW GNGFWNLLGF  60
   61 GMQMALIVVT GNALATSPQI RKFLSTIASI AKTPAQGVVL VTFMGSIACI INWGFGLVVG 120
  121 AMFAKEVARR IKGSDYALLI ACAYIAFMTW GGGFSGSMPL LAATPGNPVA HLMVSESNPQ 180
  181 GIIPAVSTLF SGYNIFITLS LVICLPFITY MMMPKNGEAK SIDPKLIAPD PTFDKKLDKD 240
  241 ATLAEKMEES RFLAYTIGAL GYSYLGMYFY KNGFNLTINN VNLIFLITGI VLHGSPMAYM 300
  301 RAIINATRST AGILVQFPFY AGVQLMMEHS GLGGLITEFF INVANKDSFP LLTFFSSAFI 360
  361 NFAVPSGGGH WVIQGPFVIP AAQALGTDLG KSTMAIAYGE QWMNMAQPFW ALPALGIAGL 420
  421 GVRDIMGFCM TALIFTAPIF IIGLYFL