YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71916914, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.93
Transmembrane Helix	26	50	0.86
Non-Cytoplasmic	51	59	0.78
Transmembrane Helix	60	84	0.83
Cytoplasmic	85	155	0.60
Transmembrane Helix	156	180	0.81
Non-Cytoplasmic	181	193	0.75
Transmembrane Helix	194	215	0.89
Cytoplasmic	216	247	0.91
Transmembrane Helix	248	270	0.90
Non-Cytoplasmic	271	278	0.75
Transmembrane Helix	279	299	0.93
Cytoplasmic	300	310	0.82
Transmembrane Helix	311	329	0.97
Non-Cytoplasmic	330	335	0.75
Transmembrane Helix	336	358	0.92
Cytoplasmic	359	374	0.88
Transmembrane Helix	375	396	0.87
Non-Cytoplasmic	397	410	0.81
Transmembrane Helix	411	432	0.92
Cytoplasmic	433	686	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRPAPLGTP SEARTVLAIP PFRRLWIALS LSSLGDWLSL LALMSLAAIL TEGEEAVIQY  60
   61 FAVSGVVVLK VLPSVVLSPI AGVLADRLDR RLTMVVGDVI RGLLYISIPI VGRLDWLLIA 120
  121 NFLAECVALF WSPAKDATVP NLVPRHRLEQ ANQLSLLTTY GSAPVAAGLF ALLASLSTVL 180
  181 GGLFPVLQTP EADIALYING VTFFVAAVVI ARLPIPTTHS SDKVTRISMF RAIWDGLRYA 240
  241 GTTRLVRGLL LGMLGAFAAG GAVIGVARIY VTHLGAGNAG FGVLFGAVFT GMALGMFAGP 300
  301 RVLRDFSRRR LFGLSLLGSG IALLLAGLIP DMVLAAVLTT GVGVGAGIAW VIGLTLLGQE 360
  361 VEDEIRGRTF AFLHAMARVV LMGSVAVSPL IAATMGSATL KAGQLSYEFH GSAGMLLIAA 420
  421 VLLILVSLVA YWQMNEGHDK TLWAELKTLL GGAAEEEGAP DKPGGLFVVL EGGEGSGKST 480
  481 QVREIAVWLR DEGFDVLTTR EPGATKLGMR LRTMLLDKAN EGMAARTEAL LYAADRAEHV 540
  541 DKVIRPALER GAIVISDRYV DSTLAYQGAG RELDPDDVAT INNWATGRLV PDLTILLDIP 600
  601 AEEGLRRHAD RPADRLESEN LEFHERVRRC FLELADRAPD RYLVLDAREP QEEITKAIRR 660
  661 HLRRILPDPV PHDAEEITGM IPIIKE