YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72162852, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSTLTKQR SAAFRSTVAL KAAMAITGAI LVLFLIAHMY GNLMIFGGQE AFDEYSHHLR  60
   61 VLGAPMLPTN GFLWIMRVVL LASVLIHMYA AFTLWNRARQ ATAGKGSRRY HSKKNRTGVQ 120
  121 RTYASFTMRW GGVVIALFVL YHLLHLTTNH IAPGGASDSP YERVVNGFQI WWVVLTYFIS 180
  181 MLAVGFHLRH GLWSAVQTLG KNKARRQRAI NAVATAVAVA ITVGFLIPPF SVLFGLVG

Type	Start	End	Confidence
Cytoplasmic	1	17	0.96
Transmembrane Helix	18	39	0.94
Non-Cytoplasmic	40	72	0.94
Transmembrane Helix	73	95	0.90
Cytoplasmic	96	125	0.94
Transmembrane Helix	126	145	0.94
Non-Cytoplasmic	146	167	0.93
Transmembrane Helix	168	188	0.92
Cytoplasmic	189	208	0.89
Transmembrane Helix	209	232	0.89
Non-Cytoplasmic	233	238	0.85