YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|72162104, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTKTTATAT GQKKARNERI RRLLLIHAGL VAFGVVMLYP LLWMLSSSFK PTEEIFRDPS  60
   61 LIPSTFMPGN YTEGWTALQH PFHHYLLNSA IVVAGAIIGN LLGCSMAAYA FARLEFFGKK 120
  121 LFFAIMLMTI MLPIHVVIVP QYILFAKLDW INTFYPLIVP KLLATDGFFV FLMVQFIRGL 180
  181 PRDLDEAARI DGCGHVRIFL QVILPLSMPA LATTAIFTFI WTWNDFFSQL IFLTDPNMYT 240
  241 VPVALRTFVD STSQTSWGPL FAMSIVALGP VFGFFLAGQR YLVRGIATTG IK

Type	Start	End	Confidence
Cytoplasmic	1	22	0.97
Transmembrane Helix	23	43	0.95
Non-Cytoplasmic	44	84	0.97
Transmembrane Helix	85	111	0.82
Cytoplasmic	112	120	0.87
Transmembrane Helix	121	144	0.88
Non-Cytoplasmic	145	156	0.89
Transmembrane Helix	157	177	0.90
Cytoplasmic	178	197	0.90
Transmembrane Helix	198	221	0.92
Non-Cytoplasmic	222	256	0.94
Transmembrane Helix	257	278	0.89
Cytoplasmic	279	292	0.85