YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78195239, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTKSGMACR SCFLVLLIAL LTFSNLAIPT AGAEARVVTV GVYENSPKIF TDDSGKPSGI  60
   61 FIDIIEHIAK TEGWNLHYVH GTWVEGLDRL AKGEIDLMPD VAYTAERENL YSFHRIPVLT 120
  121 GWSQVYARKG SGIQSILNLN GKRVAALEQT IQFETFRRLA SSFGLKITLI PVPDYKTEFD 180
  181 MLANGKIDAA VTNRFYGLRH ARESGLEDTP IMFDPAPFFF AAPRDASRHL LDAIDRHLAE 240
  241 LKKDPRSAYY ASLNRWTSED VQFKLPVWLQ VSGLILGVVV IMTVTGFILW NRTLRRTVKL 300
  301 RTAQLEQELA ERKMAEEELR KYRENLEDLV RERTAELAVA KERAEAADQL KSAFLATMSH 360
  361 ELRTPLNSII GFTGILLQGL GGPINDEQAK QLTMVRHSAN HLLSLISDVL DISKIEAGQL 420
  421 KISPEPFQLR ESVQKVTQSV AGLVDKKGLR LILEIADDVG SIVSDQRRVE QVLLNLLSNA 480
  481 VKFTEQGTIS VRCSRESEWY VTSVADSGIG IKEEDLERLF KPFHQVDTGL SRKYEGTGLG 540
  541 LSICKRLVEL MGGSITVESR QGEGSTFCFL LPANGG

Type	Start	End	Confidence
Signal Peptide	1	33	0.96
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	267	0.99
Transmembrane Helix	268	291	0.89
Cytoplasmic	292	576	0.64