YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78194855, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLFTSTVGR KVLMAITGQF LVLFIIVHLL GNSSIFIPGG INAYAEHLHA LPPLVWGFRL  60
   61 VILCVAIIHI FFGVQLSLEN RAANPDTYAV KNLKEATLSS TSMLYTGLLL LAFILYHLLQ 120
  121 FTVRATPDIK VGVDALGRVD VFGMVTNSFS HGIIAVLYIA AMVVLFLHLS HGIQSFFQTM 180
  181 GWNNHKSRPV FSTIGKVAAV VFLLGYASIP FVIVTGILKG

Type	Start	End	Confidence
Cytoplasmic	1	11	0.94
Transmembrane Helix	12	37	0.77
Non-Cytoplasmic	38	54	0.84
Transmembrane Helix	55	76	0.91
Cytoplasmic	77	96	0.93
Transmembrane Helix	97	119	0.87
Non-Cytoplasmic	120	150	0.93
Transmembrane Helix	151	172	0.92
Cytoplasmic	173	192	0.89
Transmembrane Helix	193	214	0.91
Non-Cytoplasmic	215	220	0.74