YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78194827, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPYGDTDA EGSPLRPSPT LPNGDPVKPS RFIDSVNCAI EGIFWATRTQ KHMRRHFLSA  60
   61 LVLLFAVLFL RVSALEFTLL AVSVSFVLFA ELMNTAVEVV VDMVSPEYHP LARIAKDVAA 120
  121 GGVLVAAIGA AVMGYLILSH YIFPIYKEAL AMIGTPSEMG AVVALLAVVI VVVILKSISG 180
  181 KGTPLEGGLP SGHAAVAFSI ATLVTLNTQD PLTSILAIIL AVMVSHSRLL LNIHTMREVV 240
  241 FGAATGTGIT LLVLMLFRFM K

Type	Start	End	Confidence
Cytoplasmic	1	55	0.97
Transmembrane Helix	56	75	0.90
Non-Cytoplasmic	76	78	0.67
Transmembrane Helix	79	101	0.72
Cytoplasmic	102	117	0.69
Transmembrane Helix	118	142	0.86
Non-Cytoplasmic	143	158	0.62
Transmembrane Helix	159	178	0.90
Cytoplasmic	179	186	0.65
Transmembrane Helix	187	206	0.82
Non-Cytoplasmic	207	211	0.65
Transmembrane Helix	212	231	0.85
Cytoplasmic	232	238	0.66
Transmembrane Helix	239	260	0.91
Non-Cytoplasmic	261	261	0.73