YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78222813, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRVVVTGVG AISPLGTGNG KNWDALVAGR SGIDLITRFD ASELPVKIAG EVKDFTPEDF  60
   61 IEKKEVKKMD LFIQYALAAA QFAMEDSGLQ ITDENAERVG VIVGAGLGGL PTIEKYHAAM 120
  121 LEGGYKKISP FFIPMLIINL APGHISIKYG AKGPNLSSVS ACATGTHSIG DAYHMIKRGD 180
  181 ADAMIAGGTE STVTPLGIGG FAVMKALSTR NDDPKGASRP FEKSRDGFVL AEGAGIVILE 240
  241 EYESAKKRGA KIYAEVVGYG LSGDAYHLTA PAPEGEGAAR CIKMALNNAG INADQVDYIN 300
  301 AHGTSTHFND YYETLAIKKV FGDHAKKIMV SSTKSMTGHL LGAAGGVEAV FSLMAMDKGV 360
  361 VPPTINYQEQ DSECDLDYVP NTARDAKITY AMSNNFGFGG TNASLLFKKI

Type	Start	End	Confidence
Signal Peptide	1	20	0.74
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	410	0.96