YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78221689, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMLKSHEQK RFFTGPRSPV PSPRLFFIAF QFLTIIPLPF TLRWEENDLG RSMAFFPLAG  60
   61 LTIGGLLAGA DFLLAEVLPR PIEDLLLVAL LAAMTGALHH DGLADVCDGL AARGSRDRFL 120
  121 AVMKDSRIGA VGVVGLVLGL LLKYQALLAL SPEVKRQVLF FFPAVARFAQ VQMTVGSRRA 180
  181 REDGLGAACI AGAGVTQLLV AGAITLAATY FLLGMKGIGC WAVLSLFTAG TKAWSHRRLG 240
  241 GVTGDVIGCA SELNEIICLL IIVGMQKM

Type	Start	End	Confidence
Cytoplasmic	1	19	0.90
Transmembrane Helix	20	42	0.89
Non-Cytoplasmic	43	52	0.82
Transmembrane Helix	53	75	0.91
Cytoplasmic	76	84	0.77
Transmembrane Helix	85	103	0.68
Non-Cytoplasmic	104	127	0.62
Transmembrane Helix	128	147	0.91
Cytoplasmic	148	183	0.70
Transmembrane Helix	184	206	0.88
Non-Cytoplasmic	207	211	0.60
Transmembrane Helix	212	231	0.85
Cytoplasmic	232	268	0.58