YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTNA_GEOMG
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRTIEWRD DKVIMIDQTR LPGEEVYCEY GDYKSVAEAI RGMIIRGAPA IGVAAAMGVA  60
   61 LGAREIIADT HESFLRQLDN VCDVLARTRP TAVNLFWAIE RMKRVAADNC GGSLDEVREV 120
  121 LKAEAIRIEE EDLALCKAIG RHGAGLIPEG ATVLTHCNAG GLATAGYGTA LGVIRAAHEA 180
  181 GKNIQVFADE TRPWLQGARL TAWELMKDGI PVTLISDNMA GFFMKRGEIT CCVVGADRIA 240
  241 ANGDTANKIG TYSVAVLAKE NNIPFYVAAP TSTLDLSLEN GDQIPIEERH AREVTHLQGL 300
  301 PVAPEGIAVR NPAFDVTPAR YIAGIITEKG VITGDYTAKL KALVKP

Type	Start	End	Confidence
Cytoplasmic	1	43	0.73
Transmembrane Helix	44	63	0.68
Non-Cytoplasmic	64	346	0.95