YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83593607, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGQTSGGCP TVHQAPTKRK RTMDQNSAIT LAVFIGICML TALSGAFFRP GKWYQTIRKP  60
   61 SWNPPDKVFG PVWGILYIMI AVAGWLVWMT APFSETMILP MTIFGVQLVM NFLWSGLFFG 120
  121 AKRIDLALLE VSFLWISVIE LILAFLPIHP LAGYLLIPYA LWVSFAAFLN LVIYRLNRKP 180
  181 TPVAEPAV

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.89
Transmembrane Helix	28	48	0.94
Cytoplasmic	49	68	0.83
Transmembrane Helix	69	89	0.95
Non-Cytoplasmic	90	96	0.76
Transmembrane Helix	97	118	0.90
Cytoplasmic	119	125	0.76
Transmembrane Helix	126	148	0.84
Non-Cytoplasmic	149	154	0.68
Transmembrane Helix	155	174	0.93
Cytoplasmic	175	188	0.89