YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56750194, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYGGLSVFLS WGKRHALNGS AIAPAAVPAL HLVKNWQPRD RHRQNRSASR LTVMGSRRNN  60
   61 HRHPRKTKRQ NFRHRLTSTV YQAPGTLRQP LEASPTQLRQ IEYSANQIVS RPISDPLDLV 120
  121 SARMGETGTT WLQMQGFSDL EQLRSLGEVL ELNPLTLEDL IGHPQRPKQE RYPHYLEVIF 180
  181 YRPDLQPGDR LRLEQVGLVL GDRWLLTVEA DEIGPNFSGL EQRLANRTAY PRLEADTLAY 240
  241 LAIDWIIDTY FPVLEVLGEE LEQLEDAVVA QPTQALLSDI YELRRELMVL RRVVWPLRDV 300
  301 INALIRDRTP LIREEVRMDL RDCADHAYFL LDTLETYRDL ANNLMEVYLS SISNRLNQVM 360
  361 KLLAILSTVF MPLTLIAGIY GMNFNPEASR WNMPELNWPY GYPAVLLAMV AIAIVLLWLF 420
  421 WQRGWFEDWS RPSFRSRQDT

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.69
Transmembrane Helix	15	33	0.67
Cytoplasmic	34	361	0.95
Transmembrane Helix	362	382	0.94
Non-Cytoplasmic	383	399	0.91
Transmembrane Helix	400	421	0.94
Cytoplasmic	422	440	0.92