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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|65303586
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLSGYKSQV DTSRTNRYSS LYHDWFIIGV GCFTYFLVGL SLTLVYVLCE MDYFMLSGLF  60
   61 RIQRFFSDDA YYFSKQVVLM YGVIGFIFTL VIGPIGKISC ILWSWILTLT YLVFGTHSYL 120
  121 FGFIQYGKLL IRSISIISLI THILMCNFIF FLFDPIDNAT KPAENNSSDE KTDKAEEDNK 180
  181 TKSDDKDNLH ERAKRSKHLN AIGPYGSLVY YRVIMFLVGF FLGSPIILFV LRISLSVDTF 240
  241 SEKDPIMSSV DMCRIMMLMF SISVMASVFL TLTFSNAQVT EYTLMPFRMI SFRRLKKTMF 300
  301 NFFDIELLVV VWIINPLIMT LIPYTTRIHS EFHKFTLLHR LLFALFLIAI MILMHRDILY 360
  361 SCIRTIKLLN ASIFNILYTD GYIQINDNKL LRDTPVSTTP YSNYTLRHSG DTPTMVPNEI 420
  421 SVPSEVSYPY FENGWDHIEN EDKKLLLRSY QIQQSLERLS HYINTGGDMD IRNIHSDPDL 480
  481 SLCKPQIDTS DESETNPNDP MKSTVYLLNE YKSELMSMLE DDSQITLSEQ SMRPTIVLQN 540
  541 VSRLSKHFND FIWITLSHNH LEENKIFVKY FDELTNSVCK LLDILKPVDN CCCVCCYRLN 600
  601 IKSNSCKNRN ESENTINCFC SMENLLQDSK STCLNPHTIL SSDNIVDGTK PCLCLIINFI 660
  661 FKPILEIYTC HFVVILSDFF KTSKREFNKH TYKTRLSIDM AKFIFLIIGL IDKIIISLEE 720
  721 RYLCKCDKTC CADDKKISCT CCNHTNKCGT KVQCCSCPKS NGECKCCCKQ NGACQQSCCS 780
  781 KATNGSTSCV CCRCCCICFC RCPNDEYYPY FISLILYLSQ LIMDLFTFDN EKIQMATQYL 840
  841 SNLIAEYYAM GLNPHKQRSK IPSTSGNQTN SVTSFNIGYE IKISEDSIEL NLGLSKILLS 900
  901 SLEKKCLIIQ SFGLIIITEI KTSVFTSFFQ KLSELSFFLI KEENVSSETK KQIKTITTII 960
  961 SEQYMLTIKN QGSQQVLKCC TNNYKCTCKC CKLICFCIRL FSSKLKLISS ELTDAGILKF1020
 1021 MNSTLNNAEL NPLATDKIRM INASSESLIK STKNSRISDS TSSMIYGSDF DHINPKYFGY1080
 1081 DDVYRPHPHF GSGYFKFVLS RVFIVIILLF MFIFIRTRFD RFVKPDIFGA YLIKVDSNIN1140
 1141 RFREVLHNRL GHSIRNIGRI GSLNSLFDDM PDPSHHLVFE YPELADIQDL KSWSETDSIS1200
 1201 DTFTDAIYDE QSRTVQESRR RKVAFYIVIV VFSLLSSLYL NFVVRDLSVM LNLDHSTWSY1260
 1261 FICITILLGM IISLVVKYCV HLYDFVYVLE KYSNRLTKIE SFVDDSFGGI TGNLSYTSKF1320
 1321 IILFQLLRSL KTDIVSLFSM NYPYHIPAQS LMKNKVYPYK DMTSDMERMM TCENIECIRS1380
 1381 MVLETIGTPE SMDLQNILDF ISYAAIRNTS EFDKYHGYFS GNERYLAWRL GKLLSHNFFL1440
 1441 LTYGRYSCIL EMDHIIRNLH VPITEFHNCQ MLWQLFGNYE SNLISLKCMG EESIGVPLTA1500
 1501 IQRDVLRNKF NEEYIGEFNK YQEFIMRNLH INIHDSDDDE ECSCYFPYPE LIKCPLDRDK1560
 1561 VARLTREYFG DNRRLSLSLP TTSCNVTKQV SNQTKSSSVS VTKFCDHWLN MRLGYCDTEE1620
 1621 CEKAVRFAHD LIVSKLSSDS DIFESIKETV ASMKLNILNT EEVYVTPEDI HVPIKSSEHK1680
 1681 SLKDYTNKLN ELRYKTSDNY HDTVLDYLNR YMMETMTNTE KIMVPLGIFL SWYGIPICEQ1740
 1741 HIRNMGKFQY LI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle