YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|65304424
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCRILSHYN IHVILPFISI IYLINISFFK YSFKGGNFKN NKQGSGNKFK GGRHAQGKSQ  60
   61 KKQHGSSGSN KVVVVPHRFP GVYIAKGKSD ALVTRNMVVG ESIYGEKRIE VTNEDGEKIE 120
  121 YRMWNPFRSK LGATIIGGVA NMPIGIGSKV LYLGAANGTT VSHVSDMVGP TGLVYAVEFS 180
  181 HRSARDLTNM AKRRPNIVPI VEDARQPQKY RMLVGMVDII FADVAQPDQA RIVAMNADHF 240
  241 LKPAGWYIIA IKANCVDSTA SPEAVFAGLL PTEHNYVAEV DKLRKENCKP REQLTLEPYH 300
  301 RDHAVVIGQY RVKKKQAS

Type	Start	End	Confidence
Cytoplasmic	1	7	0.49
Transmembrane Helix	8	29	0.81
Non-Cytoplasmic	30	318	0.59