YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56698654, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.85
Transmembrane Helix	6	27	0.84
Cytoplasmic	28	33	0.91
Transmembrane Helix	34	54	0.90
Non-Cytoplasmic	55	66	0.72
Transmembrane Helix	67	86	0.95
Cytoplasmic	87	97	0.77
Transmembrane Helix	98	118	0.89
Non-Cytoplasmic	119	125	0.65
Transmembrane Helix	126	147	0.91
Cytoplasmic	148	163	0.80
Transmembrane Helix	164	183	0.88
Non-Cytoplasmic	184	193	0.81
Transmembrane Helix	194	216	0.91
Cytoplasmic	217	227	0.79
Transmembrane Helix	228	248	0.92
Non-Cytoplasmic	249	254	0.75
Transmembrane Helix	255	275	0.91
Cytoplasmic	276	285	0.75
Transmembrane Helix	286	306	0.94
Non-Cytoplasmic	307	309	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEIFLRTLP FFVIIGLGFW AGRTRFFTPE ATAYLTKFVF FFALSAMLFR FAATLPFAEI  60
   61 FNGQLVMGYL WGTAGVYGIA SLVAFLRKLD VPTAAVEAQC AAIGNVGFLG LPMLAMLFGE 120
  121 AAIGPVMLVL SVDLIVFSSL IVILINGGRD GRLSLGTLRL IGMGLLKNPM IVSISAGLIW 180
  181 SSLRLPIPAP LNDFLTILGG AATPGALFAI GASLAGRSAE RVQIAAWLSL CKLVIHPILV 240
  241 ALAVLWVFPV DAFSASVAIA AAALPVAGNV YMLAAHYGVA PQRASAAILL STAVSILTVP 300
  301 AFIAWVTSA