YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56698590, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLVTIYGG SGFVGRYIAR RMAKEGWRVR VAVRRPNEAM HVKPYGAVGQ VEPVLCNLRD  60
   61 DNSVAQTMRG ADAVVNCVGV LNELGRNSFD AVQAEGAERI ARIAAEQGVA RMVHVSAIGA 120
  121 DGDSDSAYSR SKALGEAGVL RHMPDAMILR PSVIFGTEDQ FFNRFAGMTR FGPFLPVVGA 180
  181 ETRFQPVYVD DVARAAVKGV LGQAPGGVYE LGGPDVETFR ALMQRMLGVI HRKRIIIALP 240
  241 FFAARIMAGM LDVAKFVSFQ LFPNNILTRD QLKNLRRDNV VSEGAKGFAD LGIAPEPMDT 300
  301 VLPAYLWKFR PNGQYDEIQA SAKNLRA

Type	Start	End	Confidence
Cytoplasmic	1	234	0.67
Transmembrane Helix	235	254	0.65
Non-Cytoplasmic	255	327	0.96