YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680208, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPGKAYLGT EEIRPLAERS DAMGLWLVAH CWGTIALAVA LFGLWPNPLT FALAVVVIGS  60
   61 RQLGLAILMH EAAHNALFRN RRLNDIVGEW LCGRPILAEL AAYRHYHLTH HRFTQTDKDP 120
  121 DLVLSSKFPT SHASMQRKFA RDLTGRTGIK QLIGQIMMSF RLAGDDEAIK AAASDFAQSF 180
  181 KAPQLWKSLP VFVGIALLIS LAGDWWWGLA FWILPYLTWF QFVLRIRNIA EHGATEQSED 240
  241 PFQNVRTTYA GPIARLLVAP YWVNYHLEHH MIMHVPCYNL PRMHALLLDK GLGGRMKTAP 300
  301 SYGAALREAG WRSA

Type	Start	End	Confidence
Cytoplasmic	1	22	0.96
Transmembrane Helix	23	44	0.93
Non-Cytoplasmic	45	50	0.77
Transmembrane Helix	51	72	0.91
Cytoplasmic	73	188	0.96
Transmembrane Helix	189	214	0.82
Non-Cytoplasmic	215	314	0.52