YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680196, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.64
Transmembrane Helix	5	26	0.75
Cytoplasmic	27	32	0.56
Transmembrane Helix	33	55	0.82
Non-Cytoplasmic	56	71	0.60
Transmembrane Helix	72	93	0.84
Cytoplasmic	94	103	0.61
Transmembrane Helix	104	123	0.82
Non-Cytoplasmic	124	124	0.25
Transmembrane Helix	125	143	0.70
Cytoplasmic	144	173	0.62
Transmembrane Helix	174	196	0.86
Non-Cytoplasmic	197	210	0.50
Transmembrane Helix	211	233	0.74
Cytoplasmic	234	241	0.63
Transmembrane Helix	242	265	0.86
Non-Cytoplasmic	266	272	0.61
Transmembrane Helix	273	294	0.87
Cytoplasmic	295	300	0.55
Transmembrane Helix	301	318	0.83
Non-Cytoplasmic	319	319	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMPWILSALG LVILLLAGDA LVRGAVNLSL RLGVPALIVS LTIVAFGTSA PELLISIKAV  60
   61 LEHAPGIALG NVVGSNTANI LLVLGVPALL ATLHTSECNT RRNYVLMILA SVLFIGLAFC 120
  121 GTFTATSGLI LLAGLGLILA NAFREAHAHR KACGDPCADD DLEALEEADP DMPWWRIGIY 180
  181 LLLGLIGLPM GAHLLVENAS IIARTYGVSE TVIGLTLVAV GTSLPELATT VMAALRRQAD 240
  241 VALGNVIGSN MFNLLAIIGV ATMFGPIPVD PEFLRFDLWV MLAASLLLIP FVFFKWDITR 300
  301 TWGVFLTGIY LVYIVVVLI