YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56698455, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWNLPNILT LLRLLAAPGL AVMFLYFTRP YADWFALILF VSAAITDWFD GYLARAWKQE  60
   61 TKMGAMLDPI ADKAMVVIAL MILVGYSTEH WTPWLVLPAT VILFREVFVS GLREFLGDVA 120
  121 GTLKVTKLAK WKTTAQMIAI AVLFSQGIFE HYLVMSSFGM DQGIVDQIMA GEVADLQGLR 180
  181 WKLDGMIWSG RVGLWLLWIA AGLTLITGYD YLRKSMPHLK ETR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.93
Transmembrane Helix	9	28	0.94
Non-Cytoplasmic	29	33	0.85
Transmembrane Helix	34	54	0.90
Cytoplasmic	55	68	0.85
Transmembrane Helix	69	88	0.85
Non-Cytoplasmic	89	93	0.69
Transmembrane Helix	94	116	0.77
Cytoplasmic	117	132	0.86
Transmembrane Helix	133	154	0.86
Non-Cytoplasmic	155	191	0.93
Transmembrane Helix	192	212	0.90
Cytoplasmic	213	223	0.95