YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680187, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.96
Transmembrane Helix	42	60	0.95
Non-Cytoplasmic	61	69	0.78
Transmembrane Helix	70	91	0.89
Cytoplasmic	92	114	0.87
Transmembrane Helix	115	135	0.89
Non-Cytoplasmic	136	140	0.65
Transmembrane Helix	141	159	0.86
Cytoplasmic	160	163	0.75
Transmembrane Helix	164	185	0.81
Non-Cytoplasmic	186	188	0.68
Transmembrane Helix	189	211	0.78
Cytoplasmic	212	237	0.83
Transmembrane Helix	238	257	0.91
Non-Cytoplasmic	258	262	0.66
Transmembrane Helix	263	283	0.91
Cytoplasmic	284	299	0.86
Transmembrane Helix	300	319	0.68
Non-Cytoplasmic	320	320	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGQAPTPDG QVADAVTGNW VDIHAPAWSR PYLRLSRADR PIGTWLLLIP CWWGLALAML  60
   61 DGQDARWGDL WIALGCAIGA FLMRGAGCTW NDITDREFDG RVERTRSRPI PSGQVSVRMA 120
  121 VVWMIAQALL ALMILLTFNR MAIAMGVLSL LPVAVYPFAK RFTWWPQVFL GLAFNWGALL 180
  181 AWTAHSGSLG WGALFLYLAG IAWTLFYDTI YAHQDTEDDA LIGVKSTARL FGAQTPRWMS 240
  241 YFLVATVSLM GIAVFEAALP DASILALVLA LAGPWAMGWH MAWQLRGLDL DDNGKLLQLF 300
  301 RVNRDTGLIP LIFFVIALFA