YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680176, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPELRVPFRG GGFRPEARRG TGIAVFLLLL FLIEWGTRTG WITNLTLPRP SDVAATLGDL  60
   61 ARSGALWTHL LPSLSRLAVG SALGISAGVG VGVLIGLFSY IRAGLVPLVA AIFPIPKIAL 120
  121 LPLFVIWFGI DEGSKYALIA LGTFTPTVVA TYGAVDNVDR GLIRMGQSFG LGWWSIVRKI 180
  181 VLPGALPGIL SGLRVSLAIG IILLVAAEML GAEHGIGAYI LQAGALYDLE RLFAGVVILS 240
  241 CLGVLTSWAI GKIEKRLLVW RG

Type	Start	End	Confidence
Cytoplasmic	1	19	0.93
Transmembrane Helix	20	38	0.94
Non-Cytoplasmic	39	76	0.83
Transmembrane Helix	77	98	0.94
Cytoplasmic	99	105	0.65
Transmembrane Helix	106	128	0.89
Non-Cytoplasmic	129	135	0.70
Transmembrane Helix	136	155	0.87
Cytoplasmic	156	189	0.65
Transmembrane Helix	190	211	0.80
Non-Cytoplasmic	212	231	0.81
Transmembrane Helix	232	251	0.96
Cytoplasmic	252	262	0.92