YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680167, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMQQRKGMT MELKGKTIII TGASSGIGAS AALLFASEGA NLVLGARRAA ELNQLTGQIT  60
   61 QSNGRAVCLA GDVTDEAYAH RLVDLARSEY GRLDGAFNNA GMMGEIGPVA EMSAANWTEV 120
  121 ITTNLTSAFF SAKAQIPALV EQGGVLVFTS SFVGVDNGGM PGMGAYAASK AGLVGLVRSL 180
  181 AADHAAEGIR VNALLPGGTR TAMAGDDPDT HDFIAGLHPM KRMGEPKEIA QAALFLMSDR 240
  241 ASFVTGTAMS VDGGISARLL

Type	Start	End	Confidence
Cytoplasmic	1	16	0.72
Transmembrane Helix	17	36	0.74
Non-Cytoplasmic	37	260	0.89