YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56698382, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTQTPIDLL LSDPPARRAT VALSEGSDPR VVAGALAAHS AGIADVILVG QAAEIRAALK  60
   61 AQGAPADSLT IHDPDSSPLT AEFAAAYYGL RRHKGVSEAA ALAAVRTPLV YAAMLVRGDH 120
  121 AVGTVGGAVA TTSDVVRTAI QVIGAAPGAA MVSSFFLMYP PEAATAHARA MLYSDSGLVI 180
  181 DPSVAELAAI AAASAASCRA LLRAEPKIAM LSFSTKGSAR HPHVSKVTDA LARLRADHPD 240
  241 LDADGELQFD AAFVPSVGAS KAPGSDVAGQ ANVMIFPNLD AGNIGYKITQ RLGGYTAIGP 300
  301 VLQGLAKPAN DLSRGCVAGD VTQMIAVTVL QAMAQTQ

Type	Start	End	Confidence
Cytoplasmic	1	137	0.56
Transmembrane Helix	138	159	0.58
Non-Cytoplasmic	160	182	0.72
Transmembrane Helix	183	202	0.46
Cytoplasmic	203	337	0.61