YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56698379, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPAPSVILF TTLSGLGFGL LFFLGLGLPS VSGWVAFVFF VIAYAMAVGG LLASTFHLGH  60
   61 PERAWKAFSQ WRTSWLSREG CAAVAALLVM GLYALGLVFL DQRWSLLGGL GALLSLGTVF 120
  121 TTSMIYAQLR TVPRWHSPLT PVLFLAFSLA GGALLAGQVR LALILLVSAA LVQLVWWRQG 180
  181 DGALARSGTD LASATGLGQG GVVRAFEPPH TGSNYLLREF VHVVGRKHAA KLRVIALVLA 240
  241 FVLPVLLLLL PFGHALALLA VLSHLAGVAV SRWLFFAQAE HVVGLYYGKR

Type	Start	End	Confidence
Cytoplasmic	1	6	0.96
Transmembrane Helix	7	28	0.93
Non-Cytoplasmic	29	35	0.76
Transmembrane Helix	36	59	0.91
Cytoplasmic	60	74	0.97
Transmembrane Helix	75	97	0.87
Non-Cytoplasmic	98	105	0.72
Transmembrane Helix	106	127	0.92
Cytoplasmic	128	134	0.86
Transmembrane Helix	135	155	0.89
Non-Cytoplasmic	156	160	0.67
Transmembrane Helix	161	177	0.95
Cytoplasmic	178	231	0.94
Transmembrane Helix	232	250	0.91
Non-Cytoplasmic	251	254	0.54
Transmembrane Helix	255	276	0.80
Cytoplasmic	277	290	0.74