YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680035, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPKHASPL ERVWHYTYLV ICALIFLFLI APILVIIPLS FNAEPYFTFT EKMLSFDAEG  60
   61 FSTRWYDLLL TFGMLEPEAP RDGSWWADAW ANAQWIQATK NSIIIGFFST ILATTLGTIA 120
  121 ALGLSRPEMP GRRAVMAILI SPMIVPIIIT ATGLFFFYSS IGIQDWGIPY LGIILAHATL 180
  181 GIPFVIITVT ATLVGFDHSL TRAAANMGAD PVTTFFKVQM PLILPGVISG ALFAFVTSFD 240
  241 EVVVVLFVGG LDEQTIPRQM WNGIREQISP AILSVATILV VISIALLTVV ELLRRRSEKL 300
  301 RGLSPG

Type	Start	End	Confidence
Cytoplasmic	1	15	0.93
Transmembrane Helix	16	39	0.91
Non-Cytoplasmic	40	102	0.97
Transmembrane Helix	103	124	0.95
Cytoplasmic	125	134	0.90
Transmembrane Helix	135	158	0.90
Non-Cytoplasmic	159	172	0.86
Transmembrane Helix	173	196	0.91
Cytoplasmic	197	214	0.93
Transmembrane Helix	215	237	0.85
Non-Cytoplasmic	238	269	0.88
Transmembrane Helix	270	290	0.96
Cytoplasmic	291	306	0.91