YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680034, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDIAQPLTT ADGKPLKGAL LRAQARARRR AFLLVLPLLA FILITFVFPI GQMLYRSVYN  60
   61 EGFTWHEDVT SGDRTPLMTN LADWFDANPP GTVPDEAAFA ALAADLVTLR DLKAPGQAGT 120
  121 RINYELSGSR SMFTKAARSA KKLEPPYKEA ILELDKDWGN PELWQAMRGA SSSYTTNFYL 180
  181 AAIDRERDAS GAVTMVPENR QVYVKLFMRT LTLSLLITFL TFILAYPIAH LLATLPLRHS 240
  241 NLLMILVLLP FWTSLLVRTT SWMVLLQSQG VLNDTLVGLG ILGDDGRLQL MYNRAGTVIS 300
  301 MTHILLPFMV LPLYSVMRMI NPSYVRAARS LGATSWTAFR RIYFPQTVPG IGAGALLVFI 360
  361 LAVGYYITPA LVGGADGQLI SNLIAFHMQK SLNWSLAAAL AALLLAGVLL LYWLYDRLIG 420
  421 IDNLKLG

Type	Start	End	Confidence
Cytoplasmic	1	30	0.98
Transmembrane Helix	31	53	0.91
Non-Cytoplasmic	54	209	0.84
Transmembrane Helix	210	233	0.84
Cytoplasmic	234	241	0.62
Transmembrane Helix	242	262	0.87
Non-Cytoplasmic	263	298	0.76
Transmembrane Helix	299	321	0.83
Cytoplasmic	322	341	0.87
Transmembrane Helix	342	367	0.82
Non-Cytoplasmic	368	393	0.80
Transmembrane Helix	394	415	0.94
Cytoplasmic	416	427	0.86