YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56698290, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSHGGCAAG KLMRRFLLIA IPYAWLLVLF LVPFVIVLKI SLSDAAIARP PYFPQFDWAE  60
   61 GVMAFVRELD FENFIFLTQD DLYWKAYLSS LRIATTATLL TLVAGYPIAY AMARAPEEWR 120
  121 PTLMMLVILP FWTSFLIRVY AWMGILSNEG YLNQILLWTG IINEPLTILN TNTAVYIGIV 180
  181 YTYLPFMILP VYSALDRMDG SLIEAAEDLG CSRAQAFWLV TIPLSRPGII AGCFLVFIPV 240
  241 LGEFVIPSLL GGSGTLMIGK VLWEEFFSNR DWPVASAVAV VLLLILVVPI VLFQRNQQKQ 300
  301 AEAEK

Type	Start	End	Confidence
Cytoplasmic	1	15	0.97
Transmembrane Helix	16	40	0.84
Non-Cytoplasmic	41	90	0.92
Transmembrane Helix	91	110	0.93
Cytoplasmic	111	121	0.81
Transmembrane Helix	122	142	0.92
Non-Cytoplasmic	143	172	0.84
Transmembrane Helix	173	195	0.82
Cytoplasmic	196	227	0.84
Transmembrane Helix	228	251	0.80
Non-Cytoplasmic	252	271	0.76
Transmembrane Helix	272	293	0.94
Cytoplasmic	294	305	0.78