YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56698289, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRMSWFNTV SLTLGFAFLY IPMLILIVYS FNESKLVTVW AGFSTKWYGE LFQNDAFLNA  60
   61 AWVTLKVAVM SSTLATILGT MAALVLVRAG RFMGRTLFSG MIYAPLVMPE VITGLSLLLL 120
  121 FIGIGLDRGV MTIVLAHTTF AMCYVSVVVS SRLVTFDRSL EEAALDLGCS AAEAFRLVTL 180
  181 PIIAPAVISG WLLAFTLSLD DLVIASFTSG PAATTLPIKI FSAVRLGVSP EINALSTIMI 240
  241 GIVTVGVISA SLISKQALVR QKRDEQAAAR G

Type	Start	End	Confidence
Cytoplasmic	1	8	0.89
Transmembrane Helix	9	31	0.91
Non-Cytoplasmic	32	66	0.91
Transmembrane Helix	67	87	0.93
Cytoplasmic	88	101	0.81
Transmembrane Helix	102	124	0.91
Non-Cytoplasmic	125	132	0.81
Transmembrane Helix	133	156	0.90
Cytoplasmic	157	174	0.96
Transmembrane Helix	175	195	0.92
Non-Cytoplasmic	196	231	0.72
Transmembrane Helix	232	253	0.90
Cytoplasmic	254	271	0.67