YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680010, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSTVAPPR RERFFFTQPD EFDFDNRFTQ AALTKHKREG LELAVRARWI AMAVIAVLLV  60
   61 FVNPHWDVVY YHAILALLAV NGWFIRRAGR VGQSRLELLL ILIDLLIMTL GMVLPNPLSD 120
  121 DVRPLAMQYR FDNFQYFFVI LAAGTLAYSW RTVITIGTWT AMLWTLGWVI ARWQSEPIAE 180
  181 LSARAQAAFA GFPDVAEQLD PNSFMLQLRV QEVVVFLIVA VTLGVTVRRF NRLLTTNAGL 240
  241 ERERANLSRY FSPNVVDALS QNDEPLKQVR QEDIAVLFID IIGFTRFAAG RDPYEVIEVL 300
  301 RGFHARMEGE VFRHHGTLDK YLGDGLMATF GTPVAGQSDG SNALACARAM AKTIGDWNRE 360
  361 RRRAGEPEIR AGIGVHYGPA VLGDIGANRL EFAVIGNTVN VAAKLETQTR VYDASIVISD 420
  421 DLRRKVLAEG GAILTDGFDE RRDEAIPGMA APMTVWVL

Type	Start	End	Confidence
Cytoplasmic	1	44	0.98
Transmembrane Helix	45	62	0.97
Non-Cytoplasmic	63	67	0.84
Transmembrane Helix	68	85	0.94
Cytoplasmic	86	97	0.77
Transmembrane Helix	98	118	0.89
Non-Cytoplasmic	119	133	0.92
Transmembrane Helix	134	168	0.68
Cytoplasmic	169	207	0.66
Transmembrane Helix	208	227	0.65
Non-Cytoplasmic	228	458	0.58