YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56698272, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPTETLARW QSAAPFWLSF LLIPLVWLVA SQGGWWLLAV PLSTWWAFAI YDQVTGLNEE  60
   61 NADPQTGDGA LGWYILLPKL WVPLQFVTLY GLIWYATRAD HLSTLEKIAL FFGVGVITGT 120
  121 IGINYSHELM HQKNRFERWL GDILLAMVLY SHFRSEHLLV HHRHVGTPRD PVTARYNEGF 180
  181 HRFYPRVLVQ CLRSAFRAER EMLARKDRPW TDPANPFWRY WALQGGMLAL AGLLGGWAGI 240
  241 GLFLVQAGIA IWQLELVNYV EHYGLTRKHL GEGKYEHVMP RHSWNAAQKA SNWLLINLQR 300
  301 HSDHHYKPDR RFPLLQNHTE ADAPQLPYGY PVMTVAAMIP PLWRRVMNPR VRAWRKRYYP 360
  361 EITDWKPYNK ALNPAPR

Type	Start	End	Confidence
Cytoplasmic	1	15	0.90
Transmembrane Helix	16	39	0.89
Non-Cytoplasmic	40	74	0.91
Transmembrane Helix	75	96	0.85
Cytoplasmic	97	107	0.77
Transmembrane Helix	108	127	0.90
Non-Cytoplasmic	128	137	0.72
Transmembrane Helix	138	153	0.79
Cytoplasmic	154	225	0.87
Transmembrane Helix	226	250	0.84
Non-Cytoplasmic	251	326	0.91
Transmembrane Helix	327	347	0.81
Cytoplasmic	348	377	0.94